Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs77957078 | chr3:48331286 | G/C | 0.000133 | 496 | 37.67 | 37.77 | 26.73 | KM Plot |
KIRC | rs77984489 | chr2:109479751 | A/G | 8.46E-12 | 508 | 37.73 | 26.92 | 2.3 | KM Plot |
KIRC | rs78024263 | chr19:7013645 | C/A | 0.000131 | 490 | 37.77 | 34.82 | 6.77 | KM Plot |
KIRC | rs78055062 | chr16:2943251 | G/A | 1.6E-5 | 502 | 36.12 | 44.3 | 3.37 | KM Plot |
KIRC | rs78159520 | chr3:48349023 | T/C | 6.43E-6 | 502 | 37.67 | 37.77 | 19.13 | KM Plot |
KIRC | rs78236866 | chr11:34774031 | G/C | 8.98E-8 | 506 | 37.67 | 33.35 | 3.3 | KM Plot |
KIRC | rs78285663 | chr16:86609244 | G/A | 0 | 501 | 37.42 | 37.77 | 1.98 | KM Plot |
KIRC | rs78297260 | chr7:45740621 | T/A | 7.87E-6 | 505 | 37.47 | 35.43 | 4.57 | KM Plot |
KIRC | rs78311490 | chr4:107883049 | A/G | 4.15E-11 | 508 | 37.73 | 30.9 | 5.53 | KM Plot |
KIRC | rs78385274 | chr2:67531571 | G/C | 1.88E-7 | 505 | 37.18 | 37.73 | 2.03 | KM Plot |
KIRC | rs78391540 | chr16:66523935 | C/T | 8.73E-8 | 502 | 37.7 | 30.9 | 1.68 | KM Plot |
KIRC | rs7840035 | chr8:39992689 | C/G | 2.07E-8 | 509 | 3.37 | 48.8 | 35.15 | KM Plot |
KIRC | rs78407386 | chr11:1550824 | C/T | 8.08E-5 | 509 | 37.47 | 37.37 | 5.47 | KM Plot |
KIRC | rs78412552 | chr2:67547009 | ATTAT/A | 1.74E-7 | 507 | 37.35 | 37.73 | 2.03 | KM Plot |
KIRC | rs78443123 | chr21:47953331 | G/T | 1.55E-5 | 506 | 37.47 | 37.53 | 6.87 | KM Plot |